Introduction

phenopackets-to-fhir is a service to convert derived phenopackets objects to FHIR resources. The service is a part of the ongoing work for CHORD Metadata service. The phenopackets schemas are project-specific adaptations of Phenopackets schema standard.

The package contains:

• json schemas for Phenopacket and its elements derived/based on Phenopackets schema standard.

• functions to transform phenopackets objects to FHIR resources.

• mappings derived from Phenopackets on FHIR Implementation Guide.

The conversion uses Python SMART on FHIR client that provides validation of generated FHIR resources.