# All fixed values provided by Phenopackets on FHIR Mapping guide
PHENOPACKETS_ON_FHIR_MAPPING = {
"individual": {
"title": "Individual",
"url": "http://ga4gh.org/fhir/phenopackets/StructureDefinition/Individual",
"age": "http://ga4gh.org/fhir/phenopackets/StructureDefinition/individual-age",
"karyotypicSex": {
"url": "http://ga4gh.org/fhir/phenopackets/StructureDefinition/individual-karyotypic-sex",
"system": "http://ga4gh.org/fhir/phenopackets/CodeSystem/karyotypic-sex"
},
"taxonomy": "http://ga4gh.org/fhir/phenopackets/StructureDefinition/individual-taxonomy"
},
"phenopacket": {
"title": "Phenopacket",
"code": {
"system": "http://ga4gh.org/fhir/phenopackets/CodeSystem/document-type",
"code": "phenopacket"
},
"url": "http://ga4gh.org/fhir/phenopackets/StructureDefinition/Phenopacket",
"phenotypicFeatures": {
"title": "Phenotypic Features",
"code": {
"system": "http://ga4gh.org/fhir/phenopackets/CodeSystem/section-type",
"version": "0.1.0",
"code": "phenotypic-features",
"display": "Phenotypic Features"
}
},
"biosamples": {
"title": "Biosamples",
"code": {
"system": "http://ga4gh.org/fhir/phenopackets/CodeSystem/section-type",
"version": "0.1.0",
"code": "biosamples",
"display": "Biosamples"
}
},
"variants": {
"title": "Variants",
"code": {
"system": "http://ga4gh.org/fhir/phenopackets/CodeSystem/section-type",
"version": "0.1.0",
"code": "variants",
"display": "Variants"
}
},
"diseases": {
"title": "Diseases",
"code": {
"system": "http://ga4gh.org/fhir/phenopackets/CodeSystem/section-type",
"version": "0.1.0",
"code": "diseases",
"display": "Diseases"
}
},
"htsFiles": {
"title": "HTS Files",
"code": {
"system": "http://ga4gh.org/fhir/phenopackets/CodeSystem/section-type",
"version": "0.1.0",
"code": "hts-files",
"display": "HTS Files"
}
}
},
"biosample": {
"title": "Biosample",
"url": "http://ga4gh.org/fhir/phenopackets/StructureDefinition/Biosample",
"individualAgeAtCollection": "http://ga4gh.org/fhir/phenopackets/StructureDefinition/biosample-individual-age-at-collection",
"histologicalDiagnosis": "http://ga4gh.org/fhir/phenopackets/StructureDefinition/biosample-histological-diagnosis",
"tumorProgression": "http://ga4gh.org/fhir/phenopackets/StructureDefinition/biosample-tumor-progression",
"tumorGrade": "http://ga4gh.org/fhir/phenopackets/StructureDefinition/biosample-tumor-grade",
"diagnosticMarkers": "http://ga4gh.org/fhir/phenopackets/StructureDefinition/biosample-diagnostic-markers",
"isControlSample": "http://ga4gh.org/fhir/phenopackets/StructureDefinition/biosample-control"
},
"phenotypicFeature": {
"title": "Phenotypic Feature",
"url": "http://ga4gh.org/fhir/phenopackets/StructureDefinition/PhenotypicFeature",
"severity": "http://ga4gh.org/fhir/phenopackets/StructureDefinition/phenotypic-feature-severity",
"modifier": "http://ga4gh.org/fhir/phenopackets/StructureDefinition/phenotypic-feature-modifier",
"onset": "http://ga4gh.org/fhir/phenopackets/StructureDefinition/phenotypic-feature-onset",
"evidence": {
"url": "http://ga4gh.org/fhir/phenopackets/StructureDefinition/evidence",
# fixed value
"evidenceCode": "evidenceCode"
}
},
"externalReference": {
"url": "http://ga4gh.org/fhir/phenopackets/StructureDefinition/external-reference",
# fixed values
"idUrl": "id",
"descriptionUrl": "description"
},
"htsFile": {
"url": "http://ga4gh.org/fhir/phenopackets/StructureDefinition/HtsFile",
"genomeAssembly": "http://ga4gh.org/fhir/phenopackets/StructureDefinition/htsfile-genome-assembly",
# fixed value
"status": "current",
"htsFormat": "http://ga4gh.org/fhir/phenopackets/CodeSystem/hts-format"
},
"disease": {
"url": "http://ga4gh.org/fhir/phenopackets/StructureDefinition/Disease",
"onset": "http://ga4gh.org/fhir/phenopackets/StructureDefinition/disease-onset",
"disease_stage": "http://ga4gh.org/fhir/phenopackets/StructureDefinition/disease-tumor-stage",
}
}